A web-server to setup processing pipelines proteomics .RAW files.
- Create a project
- Create a pipeline by providing a fasta file and a MaxQuant parameter template (mqpar.xml)
- Submit .RAW files to the pipeline
- Download results
- Explore data with the integrated dashboard
The server organizes files into projects. Therefore, at least one project hast to be created. Then a pipeline can be created. Herefore, a MaxQuant parameter file (mqpar.xml) and a fasta file have to be provided.
MaxQuant Parameter file (
mqpar.xml has to be created as a blueprint for the pipeline jobs for example using
the MaxQuant GUI. The pipeline is currently restricted to process a single .RAW per job,
mqpar.xml file has to be created with a single .RAW file.
The MaxQuant version supported is
MaxQuant 1.6.10 due to limited compatability
.NET versions used by MaxQuant and current
mono is a
.NET that runs on Linux platforms.ll